Program
The IBID will bring together specialists and experts in the fields of bioanalytics, biomedical and translational research, autoimmune diagnostics, digitalization, and engineering. Join our event and find partners to drive your business successfully forward!
For the execution of the IBID we will use the browser-based OpenSource tools BigBlueButton or WebEx.
Please look in the program under the session you want to visit, there you will find the login data.
We kindly ask you to log in about 15 minutes before the start of the lectures to avoid delays.
Advisory Board
BTU Cottbus - Senftenberg (alphabetical order)
- Dr. Susann Barig
- Dr. Sarah Kammerer
- Prof. Dr. Dirk Roggenbuck
- Dr. Stefan Rödiger
- Prof. Dr. Peter Schierack
External (alphabetical order)
- Adjunct Professor Dr. Michał Burdukiewicz, Warsaw University of Technology, Poland
- Dr. Carsten Hille, TH Wildau, Germany
- Dr. Katharina Kasack, High Perfomance Center „Functional Integration“ & Fraunhofer Institute for Cell Therapy and Immunology, Branch Bioanalytics and Bioprocesses
- Prof. Dr. med. Mechthild Krause, University Hospital C. G. Carus Dresden; DKTK Dresden; Helmholtz-Zentrum Dresden-Rossendorf, Germany
- Dr. Stefan Kubick, Fraunhofer Institute for Cell Therapy and Immunology, Branch Bioanalytics and Bioprocesses, Germany
- Dr. Thilo Muth, Bundesanstalt für Materialforschung und -prüfung, Section S.3 eScience, Germany
- Dr. Günther Peine, Faculty of Health Sciences, joint Faculty of the Brandenburg University of Technology Cottbus - Senftenberg, the Brandenburg Medical School Theodor Fontane and the University of Potsdam, Potsdam, Germany
- Dr. Uwe Schedler, Freie Universität Berlin, Germany
- Dr. Ruben R. Rosencrantz, Fraunhofer Institute for Applied Polymer Research IAP, Germany
Program overview
Data Science Workshop
Time: 9:00 - 12:00
We start with pre-conference workshops on data science and a statistical computer language R.
This introductory workshop provides training in data mining with the R environment. Examples presented in the workshop will focus on applications in natural and life sciences. R is a quickly developing tool for data analysis, embraced both by academia and industry (Google, Microsoft or Facebook). This workshop will introduce attendees to key concepts of data science and give a hands-on experience without requiring a previous knowledge of R.
Since the IBID 2020 / PPRAEMED.BIO Symposium is an open access conference, participation is free of charge.
The workshop will cover fundamental topics including:
- getting to know R packages and R-related tools for data science
- data manipulation (import of data, summarizing and transforming large volumes of data),
- data visualization (graphical exploratory analysis, visualization of predictive models),
- machine learning (feature selection, tuning of predictors).
Exercises from this workshop employ data from life sciences, with a special focus on biomedical sciences and bioinformatics. Despite that fact, skills mastered during this event can be easily transferred to other applications.
Target audience:
The course is tailored for attendees with little to no experience with R. Any programming experience is welcomed, but not required to participate in the workshop. Topics touched during the workshop stuits equally needs of participants from industry and research.
Requirements:
To participate in this course you are required to bring your own laptop, with a recent version of R (http://cran.us.r-project.org/) and Rstudio (https://www.rstudio.com/products/rstudio/download/). To install necessary packages and download data run in R the following script:
source("https://raw.githubusercontent.com/michbur/IBID-R-introdution/master/install_packages.R")Registration:
Although the event is free of charge, participants must register under https://www.b-tu.de/ibid/registration, as available places are limited and information is required for certified participation. Participation in the free IBID conference is not necessary but recommended.
Login
Login link: https://bbb.innohub13.de/meeting-login.php?meetingid=06ee8e51c1ad086b23ffd5a7d594fde3
Password: IBID2020
1. Conference Day
On the first day of the conference we offer two parallel events. One will deal with the topic "Trends in Microbiota and Microbiome Research - From Regional to International Impact" while the other one will focus on "Medicine and Health of Ageing - Research, Therapy and Health Care".
Choose one or simply switch between the events. More details about the topic and the planned program can be found here:
The human microbiota has received considerable attention in recent years and has been the focus of numerous research projects. The term microbiota refers to the entirety of all microorganisms, including bacteria, viruses, protozoa, and fungi, that inhabit the human body, such as gut, skin, mouth, and respiratory system. All genes of these microorganisms are termed microbiome. It is estimated that a human being is colonised by at least an equal number of microbiota as he or she has somatic cells. Thereby, the composition is highly variable and is influenced by various factors such as nutrition, immune status, and medication.
Driven by advances in technologies and significant reduction of costs for sequence analysis the microbiota and microbiome research has increased considerably in recent years. Thereby, research focuses on the behaviour, interactions, and function of microbes within a specified environment. The challenge now is to better understand the balance between human and microbes and its role in human health and disease.
Significant microbiome research activities can be found in the Berlin Brandenburg area and beyond. This symposium will not only present the latest projects from science and industry. You are also invited to discuss future trends in this field, to network, and to encourage further activities.
The symposium is jointly organised by glyconet Berlin Brandenburg e.V., the local network in glycobiology and glycobiotechnology, and Innovation Hub 13, a joint platform between the Technical University of Applied Sciences Wildau and the Brandenburg University of Technology Cottbus - Senftenberg for improved knowledge and technology transfer.
Let yourself be inspired!
Welcome & Introduction
| 9:00-9:10 |
| Interaction between diet, gut microbiota and the intestinal barrier | 9:10-9:40 |
| Poo data = big data = good data? | 9:40-10:00 |
| Confounder-aware systems medical approaches | 10:00-10:25 |
| Virtual coffee break - Offer of virtual breakout rooms | 10:25-10:40 |
| Revealing the secret life of natural and artificial biofilms | 10:40-11:00 |
| Translating good bacteria into tailored, customer-oriented microbial products: Novozymes Berlin GmbH at a glance | 11:00-11:30 |
| Virtual coffee break - Offer of virtual breakout rooms | 11:30-11:45 |
| The skin microbiome in health and disease | 11:45-12:05 |
| Glycobiology: Promising Future For Cutting Edge Microbiome Applications | 12:05-12:25 |
Closing remarks
| 12:25-12:35 |
| Offer of virtual breakout rooms for further networking and discussion of ideas in smaller groups | 12:35-13:15 |
Login link: https://bbb.innohub13.de/meeting-login.php?meetingid=dab87c3e696abc10356330addaef5fd3
Password: IBID2020
At the same time, the module of the Faculty of Health Sciences "Medicine and Health of Ageing - Research, Therapy and Health Care" will take place. Prof. Dudenhausen will give an overview of the new faculty in his introductory lecture. This will be followed by the opening lecture which will be held by Till Bachmann and Holger Schulze (University of Edinburgh, UK). The module is divided into four main sessions: Prevention and Therapy, Healthcare Research and Digital Health, Age-Related Cell Alterations and Pitch Presentations.
Medicine and Health of Aging - Research, Therapy and Health Care
| |
The Faculty of Health Sciences Brandenburg becomes the Central Research Platform for Future Health Care
| 9:00-9:30 |
[SHIFTED] „Lauflabor“ and „Antepulse“ - Innovative Approaches for Improving Vascular Health of Risk Patients
| 9:30-9:50 |
Session 1: Prevention and Therapy
| |
| Opening Lecture [SHIFTED] - Innovation in Diagnostics for Infectious Diseases and Antimicrobial Resistance - Opportunities to learn from the COVID-19 pandemic | 9:50-10:10 |
| Early Risk Diagnosis to Prevent Chronic Pain: Challenges in personalized prevention and therapy | 10:10-10:30 |
| Break | 10:30-10:50 |
Session 2: Healthcare Research and Digital Health
| |
Mobile molecular diagnostics of viral diseases in human and veterinary medicine
| 10:50-11:10 |
| Digital Health: Risk and Perspectives of Using Algorithms | 11:10-11:30 |
Session 3: Age-Related Cell Alterations
| |
| Human platelet function in relation to age | 11:30-11:50 |
| Development of adapted vaccination strategies for directed stimulation of senescent immune cells using in vitro models1 University of Potsdam, Potsdam 2 Technical University of Applied Science Wildau3 Brandenburg Medical School, Brandenburg an der Havel4 Faculty of Health Sciences, Location Potsdam | 11:50-12:10 |
Session 4: Pitch Presentations
| |
| 12:10-13:00 |
Closing Remarks - Perspectives in Molecular Aging Research
| 13:00 |
https://mhb-fontane.webex.com/meet/mantke.mhb
no password needed
2. Conference Day
On the second day of the conference we again offer two parallel events. One will be the "PRAEMED.BIO Symposium" while the other one will be the "Symposium on Industrial Biotechnology".
Choose one or simply switch between the events. More details about the topic and the planned program can be found here:
After a short introduction we will start with the PRAEMED.BIO Symposium, which is organised by the Wachstumskern PRAEMED.BIO - Precision Medicine through Biomarker-Based Diagnostics - Senftenberg. Modern cancer therapy is caught between technological and scientific developments, demographic change, optimal patient care and affordable services. This difficult situation for patients, doctors and cost units can be addressed by precision medicine. Precision medicine is based on personalised diagnostics. This allows patients to be stratified precisely in advance of a therapy and subsequently receive optimal treatment.
Confirmed Speakers (alphabetical order)
- Boris Fehse, MD, PhD, professor, Head of Research Department, Dept. of Stem Cell Transplantation, Research, University of Hamburg, Germany
- Yudong Liu, MD, PhD, Associate professor, Department of Laboratory Medicine,Peking University People’s Hospital, China
- Roland Schwarz, PhD, Schwarz Lab Evolutionary and Cancer Genomics, Max Delbrück Center for Molecular Medicine (MDC), Germany
| Welcome and Introduction | |
| 9:00 - 9:05 | |
Precision Medicine through Biomarker-Based Diagnostics
| 9:05 - 9:20 |
| Session 1: Precision Medicine, Medical Bioinformatics and Technology | |
Biomarker – Wish and Reality
| 9:20 - 9:40 |
| In-vivo monitoring of CAR-T cells using sensitive Droplet Digital PCR | 9:40 - 10.00 |
| Personalized radiation oncology for patients with locoregionally advanced rectal carcinoma | 10:00 - 10:20 |
| Detection of tumorassociated autoantibodies and tumor DNA methylation markers on the Caleidotech imaging platform | 10:20 - 10:40 |
| New Beads for diagnostic Applications | 10:40 - 11:00 |
| Chromosomal Instability and Karyotype Evolution in Cancer | 11:00 - 11:20 |
| Detection of CHI3L1 and anti-CHI3L1 in patient diagnostic - facing the unexpected | 11:20 - 11:40 |
| Break | 11:40 - 12:10 |
| Session 2 : Precision Medicine, Medical Bioinformatics and Technology | |
Future Cancer Care: Towards Cause-Based Understanding and Primary Prevention
| 12:10 - 12:40 |
| Artificial intelligence for automated pattern recognition | 12:40 - 13:00 |
| 13:00 - 13:20 | |
| Modular robotic systems – form, fit and function for everyone | 13:20 - 13:40 |
| Results in the Development and Construction of Functional Models of a Modular Thermocycler | 13:40 - 14:00 |
| Improved adalimumab and evolocumab dose decision with comprehensive diagnostics data | 14:00 - 14:20 |
| Break | 14:20 - 14:30 |
| Session: Translational Research and New Perspectives | |
HaDeX: a tool for hydrogen-deuterium exchange mass spectrometry experiments data
| 14:30 - 14:45 |
faster, lighter, cleaner analysis of biological sequences - tidysq
| 14:45 - 15:00 |
countfitteR: count data analysis for precision medicine
| 15:00 - 15:15 |
Prediction of antimicrobial peptides with AmpGram
| 15:15 - 15:30 |
Join by browser
https://b-tu.webex.com/meet/stefan.roediger
Meeting Number: 121 844 1824
Join by video system
Dial stefan.roediger(at)b-tu.webex.com and enter your host PIN 4811.
You can also dial 62.109.219.4 and enter your meeting number.
Join by phone
+49-619-6781-9736 Germany Toll
Access code: 121 844 1824
Host PIN: 4811
Like the day before, another session will take place in parallel which is organized by the HealthCapital Berlin Brandenburg cluster and the High Performance Center "Functional Integration", and deals with the topics Synthetic biology, Platform technology for cell-free production and Biofunctionalization of Polymer Materials. Professor Fabian Commichau (BTU Cottbus-Senftenberg) will start the session with a lecture on bacterial genome minimization. Afterwards, the two research groups PZ-Syn (project leader: Dr. S. Kubick; Fraunhofer IZI-BB) and BioPol (project leader: Prof. J. Ganster; Fraunhofer IAP) will give insights into their current research projects.
Confirmed Speakers
| Welcome and short Introduction of HealthCapital and High Performance Center "Functional Integration" | 9:00-9:20 |
| From Bacillus subtilis to Minibacillus: on the road to a minimal organism | 9:20-9:45 |
| Coffee break | 9:45-9:50 |
Session: Qualifying a Fungal Platform Technoloy for the Cell-free Production of High-Value Biologicals
| 9:50-9:55 |
Unspecific peroxygenases: Functional diversity of a fungal oxyfunctionalization tool
| 9:55-10:10 |
Oxidative biocatalysts to design new oxyfunctionalization tools for drugs and added value bio-based products
| 10:10-10:25 |
Exploring the Potential of Cell-free Systems
| 10:25-10:40 |
In vitro pharmacology and toxicology test systems using physiologically relevant human hepatocytes
| 10:40-10:55 |
| Discussion | 10:55-11:05 |
| Coffee break | 11:05-11:10 |
Session: Biotechnology and Polymerscience: Bridging two Worlds for Innovation
| |
Malaysian Palm Oil, a Substrate for fast-growing Fungi
| 11:10-11:25 |
Biofunctionalizing Polymers: from Milligram to Kilogram Scale
| 11:25-11:40 |
Antimicrobial Packaging - PE Films Containing Halloysite Nanotubes Loaded with Essential Oils
| 11:40-11:55 |
Cell-Free biosensors - Synthetic biology for diagnostics
| 11:55-12:10 |
Meeting Number: 121 391 6394
Join by video system
Dial 1213916394@b-tu.webex.com
You can also dial 62.109.219.4 and enter your meeting number.
Join by Phone
+49-619-6781-9736 Germany Toll
access code: 121 391 6394